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关于Hash实现的索引法短序列匹配的要点

关于Hash实现的索引法短序列匹配的要点

作者: edger330 | 来源:发表于2019-04-04 11:15 被阅读0次

0.写在前面:

此文章主要是写在pages上面的,一些内容如果重新再用markdown写一遍的话会比较麻烦,比如一些公式下标什么的,所以采用贴图的方式了。
本文主要是关于一些论文内容的讨论(具体参见参考资料),提出了一些问题,阐述了一些方法。

`限于本人水平有限,如有错误请留言,不胜感激!


参考资料:

2009-BFAST: An Alignment Tool for Large Scale Genome Resequencing

2011-Accelerating Next Generation Genome Reassembly Alignment Using Dynamic Programming Algorithms in FPGAs

2011-An FPGA Acceleration of Short Read Human Genome Mapping

2012-Hardware Acceleration of Short Read Mapping

2013-An acceleration method of short read mapping using FPGA

2014-FPGA acceleration of short read mapping based on sort and parallel comparison

2014-FPGA Accelerator for DNA Sequence Alignment Based on an Efficient DataDependent Memory Access Scheme

2015-A Variable Length Hash Method for Faster Short

2016-Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.

2016-Optimized and Portable FPGA-Based Systolic Cell Architecture for Smith-Waterman-Based DNA Sequence Alignment

2017-A Fast and Accurate FPGA System for Short Read Mapping Based on Parallel Comparison on Hash Table

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